3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04967

Details:

PFam ID : PF04967

PFam Domain Description : HTH DNA binding domain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 449

Average sequence length: 52.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04967	D4GTV7_HALVD_142_176	18.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04967	A8M9K5_CALMQ_180_232	100

Sequence based PCA Plot of the family - PF04967 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=30 Length=8
Motif3 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay