3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04966

Details:

PFam ID : PF04966

PFam Domain Description : Carbohydrate-selective porin, OprB family

Number of Sequence in 50% Dataset : 232

Number of Sequence in Full Dataset : 597

Average sequence length: 367.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04966	E9XFZ2_ECOLX_14_78	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04966	Q31GR8_THICR_49_374	97.8

Sequence based PCA Plot of the family - PF04966 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=52 Length=8
Motif3 Start=93 Length=8
Motif4 Start=118 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay