3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04965

Details:

PFam ID : PF04965

PFam Domain Description : Gene 25-like lysozyme

Number of Sequence in 50% Dataset : 201

Number of Sequence in Full Dataset : 794

Average sequence length: 101.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04965	E9XFZ2_ECOLX_14_78	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04965	E9XFZ2_ECOLX_14_78	100

Sequence based PCA Plot of the family - PF04965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=28
Motif2 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay