3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04962

Details:

PFam ID : PF04962

PFam Domain Description : KduI/IolB family

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 507

Average sequence length: 250.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04962	B6WBI9_9FIRM_1_121	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04962	D6TSG1_9CHLR_9_281	100

Sequence based PCA Plot of the family - PF04962 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=145 Length=8
Motif2 Start=6 Length=8
Motif3 Start=157 Length=11
Motif4 Start=94 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay