3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04961

Details:

PFam ID : PF04961

PFam Domain Description : Formiminotransferase-cyclodeaminase

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 309

Average sequence length: 177.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04961	B6WBI9_9FIRM_1_121	83.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04961	F2I738_9LACT_5_207	100

Sequence based PCA Plot of the family - PF04961 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=30 Length=8
Motif3 Start=141 Length=8
Motif4 Start=163 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay