3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04960

Details:

PFam ID : PF04960

PFam Domain Description : Glutaminase

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 479

Average sequence length: 272.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04960	C1MYS1_MICPC_323_505	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04960	B3XPA4_LACRE_18_304	100

Sequence based PCA Plot of the family - PF04960 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=27 Length=17
Motif2 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay