3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04959

Details:

PFam ID : PF04959

PFam Domain Description : Arsenite-resistance protein 2

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 130

Average sequence length: 197.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04959	C1MYS1_MICPC_323_505	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04959	C4QHB7_SCHMA_642_766	100

Sequence based PCA Plot of the family - PF04959 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=4 Length=8
Motif2 Start=246 Length=8
Motif3 Start=124 Length=11
Motif4 Start=110 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay