3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04958

Details:

PFam ID : PF04958

PFam Domain Description : Arginine N-succinyltransferase beta subunit

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 195

Average sequence length: 332.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04958	D0CE45_ACIBA_1_190	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04958	A6GHR8_9DELT_3_364	100

Sequence based PCA Plot of the family - PF04958 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=220 Length=8
Motif3 Start=188 Length=11
Motif4 Start=264 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay