3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04956

Details:

PFam ID : PF04956

PFam Domain Description : TrbC/VIRB2 family

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 509

Average sequence length: 97.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04956	D3S325_FERPA_13_124	12.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04956	E8QSG5_HELPW_2_96	91.1

Sequence based PCA Plot of the family - PF04956 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay