3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04955

Details:

PFam ID : PF04955

PFam Domain Description : HupE / UreJ protein

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 253

Average sequence length: 178.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04955	E1MT01_9GAMM_8_115	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04955	C8PXD7_9GAMM_12_210	100

Sequence based PCA Plot of the family - PF04955 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay