3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04951

Details:

PFam ID : PF04951

PFam Domain Description : D-aminopeptidase

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 193

Average sequence length: 257.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04951	C0D008_9CLOT_1_272	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04951	C0D008_9CLOT_1_272	100

Sequence based PCA Plot of the family - PF04951 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=116 Length=8
Motif2 Start=105 Length=8
Motif3 Start=150 Length=11
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay