3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04945

Details:

PFam ID : PF04945

PFam Domain Description : YHS domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 695

Average sequence length: 44.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04945	D3IZ24_9POXV_49_433	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04945	D5EKN5_CORAD_47_93	99.4

Sequence based PCA Plot of the family - PF04945 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=34 Length=11
Motif3 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay