3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04942

Details:

PFam ID : PF04942

PFam Domain Description : CC domain

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 71

Average sequence length: 35.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04942	E3M0T6_CAERE_54_89	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04942	E3M0T6_CAERE_54_89	100

Sequence based PCA Plot of the family - PF04942 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay