3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04941

Details:

PFam ID : PF04941

PFam Domain Description : Late expression factor 8 (LEF-8)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 97

Average sequence length: 342.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04941	Q6SUZ5_9ABAC_1_142	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04941	Q6SUZ5_9ABAC_1_142	100

Sequence based PCA Plot of the family - PF04941 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=208 Length=8
Motif2 Start=116 Length=8
Motif3 Start=146 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay