3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04934

Details:

PFam ID : PF04934

PFam Domain Description : MED6 mediator sub complex component

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 127

Average sequence length: 138.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04934	A2DFQ7_TRIVA_12_181	77.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04934	D5GD99_TUBMM_14_166	100

Sequence based PCA Plot of the family - PF04934 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=23 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay