3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04932

Details:

PFam ID : PF04932

PFam Domain Description : O-Antigen ligase

Number of Sequence in 50% Dataset : 390

Number of Sequence in Full Dataset : 604

Average sequence length: 168.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04932	Q17DX3_AEDAE_59_821	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04932	E3PV05_CLOSD_263_572	100

Sequence based PCA Plot of the family - PF04932 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=191 Length=8
Motif3 Start=250 Length=8
Motif4 Start=237 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay