3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04931

Details:

PFam ID : PF04931

PFam Domain Description : DNA polymerase phi

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 213

Average sequence length: 400.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04931	Q17DX3_AEDAE_59_821	64.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04931	E6ZK24_9BASI_92_915	100

Sequence based PCA Plot of the family - PF04931 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=32 Length=8
Motif3 Start=408 Length=8
Motif4 Start=445 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay