3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04929

Details:

PFam ID : PF04929

PFam Domain Description : Herpes DNA replication accessory factor

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 14

Average sequence length: 363.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04929	E9M5P2_9GAMA_2_421	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04929	E9M5P2_9GAMA_2_421	100

Sequence based PCA Plot of the family - PF04929 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay