3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04922

Details:

PFam ID : PF04922

PFam Domain Description : DIE2/ALG10 family

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 185

Average sequence length: 277.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04922	ALG10_YARLI_32_468	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04922	D8LPS4_ECTSI_357_560	100

Sequence based PCA Plot of the family - PF04922 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay