3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04921

Details:

PFam ID : PF04921

PFam Domain Description : XAP5, circadian clock regulator

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 145

Average sequence length: 237.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04921	A0E3H5_PARTE_57_295	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04921	B6K6G2_SCHJY_11_269	100

Sequence based PCA Plot of the family - PF04921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=125 Length=8
Motif2 Start=182 Length=8
Motif3 Start=223 Length=8
Motif4 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay