3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04920

Details:

PFam ID : PF04920

PFam Domain Description : Family of unknown function (DUF656)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 5

Average sequence length: 83

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04920	B7U2G2_9VIRU_65_119	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04920	B7U2G1_9VIRU_1_124	100

Sequence based PCA Plot of the family - PF04920 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay