3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04918

Details:

PFam ID : PF04918

PFam Domain Description : DltD central region

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 138

Average sequence length: 159.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04918	B4D0J3_9BACT_101_275	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04918	Q251M9_DESHY_95_271	100

Sequence based PCA Plot of the family - PF04918 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=8
Motif2 Start=2 Length=8
Motif3 Start=29 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay