3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04915

Details:

PFam ID : PF04915

PFam Domain Description : DltD N-terminal region

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 87

Average sequence length: 61.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04915	B4D735_9BACT_41_102	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04915	B4D735_9BACT_41_102	100

Sequence based PCA Plot of the family - PF04915 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=34 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay