3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04914

Details:

PFam ID : PF04914

PFam Domain Description : DltD C-terminal region

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 138

Average sequence length: 123.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04914	D7V6G0_9LACO_1_59	80.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04914	C4F9U4_9ACTN_259_390	100

Sequence based PCA Plot of the family - PF04914 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=2 Length=18
Motif3 Start=105 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay