3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04913

Details:

PFam ID : PF04913

PFam Domain Description : Baculovirus Y142 protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 36

Average sequence length: 424.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04913	Q6JPA8_NPVNL_2_433	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04913	Q7TA04_GVAO_1_456	100

Sequence based PCA Plot of the family - PF04913 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=101 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay