3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04911

Details:

PFam ID : PF04911

PFam Domain Description : ATP synthase j chain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 49

Average sequence length: 50.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04911	E2M535_MONPE_3_44	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04911	Q2KGL0_MAGO7_17_63	100

Sequence based PCA Plot of the family - PF04911 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay