3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04910

Details:

PFam ID : PF04910

PFam Domain Description : Transcriptional repressor TCF25

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 164

Average sequence length: 302.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04910	E3K4W0_PUCGT_385_527	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04910	Q4P0V3_USTMA_312_703	100

Sequence based PCA Plot of the family - PF04910 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=291 Length=8
Motif2 Start=118 Length=11
Motif3 Start=132 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay