3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04909

Details:

PFam ID : PF04909

PFam Domain Description : Amidohydrolase

Number of Sequence in 50% Dataset : 868

Number of Sequence in Full Dataset : 2885

Average sequence length: 281.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04909	E1YEW5_9DELT_19_277	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04909	E7PZM4_STRDY_9_95	99.7

Sequence based PCA Plot of the family - PF04909 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=216 Length=8
Motif2 Start=392 Length=11
Motif3 Start=1 Length=14
Motif4 Start=357 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay