3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04905

Details:

PFam ID : PF04905

PFam Domain Description : NAB conserved region 2 (NCD2)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 33

Average sequence length: 143.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04905	F1KWW8_ASCSU_1_43	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04905	C4QG28_SCHMA_702_806	96.8

Sequence based PCA Plot of the family - PF04905 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay