3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04898

Details:

PFam ID : PF04898

PFam Domain Description : Glutamate synthase central domain

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 863

Average sequence length: 281.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04898	C8CB61_9BACT_1_118	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04898	E9C4I3_9EUKA_543_871	100

Sequence based PCA Plot of the family - PF04898 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=64 Length=11
Motif3 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay