3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04896

Details:

PFam ID : PF04896

PFam Domain Description : Ammonia monooxygenase/methane monooxygenase, subunit C

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 56

Average sequence length: 174.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04896	C8CB61_9BACT_1_118	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04896	A9Q6C8_9BACT_11_263	100

Sequence based PCA Plot of the family - PF04896 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=79 Length=8
Motif3 Start=93 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay