3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04895

Details:

PFam ID : PF04895

PFam Domain Description : Archaeal protein of unknown function (DUF651)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 113

Average sequence length: 106.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04895	A2BM41_HYPBU_303_414	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04895	A2BM41_HYPBU_303_414	100

Sequence based PCA Plot of the family - PF04895 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=48 Length=17
Motif2 Start=13 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay