3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04894

Details:

PFam ID : PF04894

PFam Domain Description : Archaeal protein of unknown function (DUF650)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 111

Average sequence length: 260.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04894	E7QS03_9EURY_20_295	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04894	E7QS03_9EURY_20_295	100

Sequence based PCA Plot of the family - PF04894 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=109 Length=8
Motif2 Start=130 Length=8
Motif3 Start=184 Length=11
Motif4 Start=30 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay