3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04893

Details:

PFam ID : PF04893

PFam Domain Description : Yip1 domain

Number of Sequence in 50% Dataset : 326

Number of Sequence in Full Dataset : 812

Average sequence length: 174.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04893	B9XA83_9BACT_27_243	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04893	D4GSS0_HALVD_8_243	70

Sequence based PCA Plot of the family - PF04893 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=176 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay