3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04891

Details:

PFam ID : PF04891

PFam Domain Description : NifQ

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 88

Average sequence length: 158.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04891	D3P6H3_AZOS1_32_225	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04891	D3P6H3_AZOS1_32_225	100

Sequence based PCA Plot of the family - PF04891 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=178 Length=11
Motif3 Start=128 Length=8
Motif4 Start=160 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay