3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04890

Details:

PFam ID : PF04890

PFam Domain Description : Family of unknown function (DUF648)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 32

Average sequence length: 182.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04890	Q9JSH8_CHLPN_1_70	65

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04890	D0ZZ52_CHLPP_1_343	96.7

Sequence based PCA Plot of the family - PF04890 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay