3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04889

Details:

PFam ID : PF04889

PFam Domain Description : Cwf15/Cwc15 cell cycle control protein

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 190

Average sequence length: 184.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04889	F2QNK2_PICPA_154_205	61.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04889	A5E1B6_LODEL_132_328	100

Sequence based PCA Plot of the family - PF04889 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=42 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay