3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04879

Details:

PFam ID : PF04879

PFam Domain Description : Molybdopterin oxidoreductase Fe4S4 domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 2337

Average sequence length: 55.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04879	A0LK82_SYNFM_239_293	96.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04879	E6VS66_DESAO_50_104	100

Sequence based PCA Plot of the family - PF04879 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay