3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04874

Details:

PFam ID : PF04874

PFam Domain Description : Mak16 protein C-terminal region

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 162

Average sequence length: 97.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04874	B9IEY6_POPTR_133_173	18.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04874	C5KIZ1_9ALVE_141_251	100

Sequence based PCA Plot of the family - PF04874 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=8
Motif2 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay