3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04873

Details:

PFam ID : PF04873

PFam Domain Description : Ethylene insensitive 3

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 315

Average sequence length: 280.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04873	D7T1J0_VITVI_94_325	29.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04873	Q6JC70_SOLPA_371_512	67

Sequence based PCA Plot of the family - PF04873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=48 Length=8
Motif3 Start=8 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay