3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04871

Details:

PFam ID : PF04871

PFam Domain Description : Uso1 / p115 like vesicle tethering protein, C terminal region

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 109

Average sequence length: 126.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04871	A4RYG2_OSTLU_437_504	2.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04871	C4QKB6_SCHMA_677_815	98.1

Sequence based PCA Plot of the family - PF04871 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay