3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04870

Details:

PFam ID : PF04870

PFam Domain Description : Moulting cycle

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 53

Average sequence length: 286.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04870	A8XCC8_CAEBR_1_271	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04870	Q9U257_CAEEL_54_405	100

Sequence based PCA Plot of the family - PF04870 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay