3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04869

Details:

PFam ID : PF04869

PFam Domain Description : Uso1 / p115 like vesicle tethering protein, head region

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 110

Average sequence length: 284.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04869	C9SA95_VERA1_368_568	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04869	F2R0A1_PICPA_361_708	100

Sequence based PCA Plot of the family - PF04869 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=211 Length=8
Motif2 Start=162 Length=8
Motif3 Start=279 Length=8
Motif4 Start=151 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay