3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04865

Details:

PFam ID : PF04865

PFam Domain Description : Baseplate J-like protein

Number of Sequence in 50% Dataset : 370

Number of Sequence in Full Dataset : 804

Average sequence length: 218.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04865	A0MNG8_9CAUD_227_383	85.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04865	B7KB50_CYAP7_447_699	99.7

Sequence based PCA Plot of the family - PF04865 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=29 Length=8
Motif3 Start=1 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay