3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04864

Details:

PFam ID : PF04864

PFam Domain Description : Allinase

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 74

Average sequence length: 301.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04864	B9EZ59_ORYSJ_235_303	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04864	D8SKX1_SELML_78_462	100

Sequence based PCA Plot of the family - PF04864 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=74 Length=8
Motif3 Start=108 Length=11
Motif4 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay