3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04863

Details:

PFam ID : PF04863

PFam Domain Description : Alliinase EGF-like domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 32

Average sequence length: 52.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04863	A9V152_MONBE_18_69	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04863	A9V152_MONBE_18_69	96.7

Sequence based PCA Plot of the family - PF04863 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=8
Motif2 Start=26 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay