3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04858 Details: PFam ID : PF04858 PFam Domain Description : TH1 protein Number of Sequence in 50% Dataset : 39 Number of Sequence in Full Dataset : 68 Average sequence length: 366.1 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04858D8TV43_VOLCA_431_51171.0 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04858E3WRR3_ANODA_1_368100 Sequence based PCA Plot of the family - PF04858 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=298 Length=8Motif2 Start=23 Length=8Motif3 Start=511 Length=8Motif4 Start=495 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF04858
PFam Domain Description : TH1 protein
Number of Sequence in 50% Dataset : 39
Number of Sequence in Full Dataset : 68
Average sequence length: 366.1
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER