3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04857

Details:

PFam ID : PF04857

PFam Domain Description : CAF1 family ribonuclease

Number of Sequence in 50% Dataset : 177

Number of Sequence in Full Dataset : 449

Average sequence length: 282.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04857	B9G150_ORYSJ_14_554	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04857	D7U1A4_VITVI_53_132	99.7

Sequence based PCA Plot of the family - PF04857 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=402 Length=8
Motif2 Start=17 Length=8
Motif3 Start=417 Length=8
Motif4 Start=472 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay