3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04851

Details:

PFam ID : PF04851

PFam Domain Description : Type III restriction enzyme, res subunit

Number of Sequence in 50% Dataset : 759

Number of Sequence in Full Dataset : 5784

Average sequence length: 165.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04851	B7IAD4_ACIB5_326_541	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04851	D4JH27_9FIRM_2_95	100

Sequence based PCA Plot of the family - PF04851 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=212 Length=8
Motif2 Start=238 Length=8
Motif3 Start=4 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay