3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04850

Details:

PFam ID : PF04850

PFam Domain Description : Baculovirus E66 occlusion-derived virus envelope protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 48

Average sequence length: 370.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04850	A5IZX7_9BBAC_337_712	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04850	B0FDR9_9ABAC_291_689	100

Sequence based PCA Plot of the family - PF04850 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=97 Length=8
Motif4 Start=180 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay